Well I'm an idiot - the fulltext index on page_text was missing from a default installation. It didn't break searches but probably slowed them down tremendously. Also set engine to MyISAM on page_text to avoid cryptic error messages from MySQL.
<?php
class Text_Wiki_Render_Plain_Newline extends Text_Wiki_Render {
function token($options)
{
return "\n";
}
}
?>